Is it all in your neck?

Is it all in your neck?

1. Introduction

Recently there have been some anecdotal reports of patients with a diagnosis of ME/CFS who met the criteria for a diagnosis of craniocervical instability. After surgical fusion of this joint, they reported improvement in some of their symptoms previously attributed to ME/CFS (R, R). After some reluctance, given the apparently unreasonable idea that there could be a link between a mechanical issue and ME/CFS, I found some convincing arguments in favour of that link. So here I am, with this new blog post. In paragraph 2 I will introduce some basic notions about the anatomy of the neck. In paragraph 3 I describe three points that can be taken from the middle slice of the sagittal sections of the standard MR study of the brain. These points can be used to find four lines (paragraph 4) and these four lines are the basis for quantitative diagnosis of craniocervical instability (paragraph 5 and 6). In paragraph 7, I discuss the possible link between craniocervical instability and ME/CFS. Enjoy.

Sagital section 1 bis.jpg
Figure 1. Left. The midline slice of the set of sagittal sections of an MR study of the brain of the author of this article. In the lower part of the image, we can see the section of the axis, with the odontoid process wedged between the anterior arch of the atlas and the ventral layer of the dura. The posterior arch of the atlas can also be seen just below the posterior edge of the foramen magnum. Above the foramen magnum, the brainstem with its three components: the medulla (or medulla oblongata), pons, and midbrain. Right. Lateral-posterior view of the atlas and the axis. They make up a one degree of freedom kinematic pair with the rotation axis corresponding to the axis of the odontoid. By Paolo Maccallini.

2. Basic anatomy

The craniocervical (or craniovertebral) junction (CCJ) is a complex joint that includes the base of the skull (occipital bone, or occiput), the first cervical vertebra (atlas or C1), the second cervical vertebra (axis or C2), and all the ligaments that connect these bones (Smoker WRK 1994). This joint encloses the lower part of the brainstem (medulla oblongata) and the upper trait of the spinal cord, along with the lower cranial nerves (particularly the tenth cranial nerve, the vagus nerve). Since the CCJ is included in the series of sagittal sections of every MR study of the brain, its morphology can be easily assessed (figure 1, left). It is worth mentioning that the CCJ is the only joint of the body that encloses part of the brain. The atlas and the axis are represented with more detail in figure 1 (right), where their reciprocal interaction has been highlighted. From a mechanical point of view, these two bones make up a revolute joint, with the rotation axis going through the odontoid process. This is only a simplification, though, because while it is true that the atlantoaxial joint provides mainly axial rotation,  there are also 20 degrees of flexion/extension and 5 degrees of lateral bending, which means that spherical joint would be a more appropriate definition. Other degrees of freedom are provided at the level of the occipital atlantal joint, where 25 degrees of motion are provided for flexion/extension, 5 degrees of motion are provided for one side lateral bending and other 10 degrees are provided for axial rotation (White A. & Panjabi M.M. 1978).

3. Points

The measurement of the Grabb’s line and of the clival-canal angle is based on a simple algorithm which starts with the identification of three points on the midline sagittal image of a standard MRI scan of the head (figure 2). In order to find this particular slice, search for the sagittal section where the upper limit of the odontoid process reaches its highest and/or the slice with the widest section of the odontoid process. This algorithm is mainly taken from (Martin J.E. et al. 2017). In looking at T1-weighted images, always keep in mind that cortical bone (and cerebrospinal fluid too) gives a low signal (black strips) while marrow bone gives a high signal (bright regions) (R).

  • Clival point (CP). It is the most dorsal extension of the cortical bone of the clivus at the level of the sphenooccipital suture. This suture can’t be seen clearly in some cases (figure 3 is one of these cases). So another definition can be used for CP: it is the point of the dorsal cortical bone of the clivus at 2 centimetres above the Basion (see next point).
  • Basion (B). It is the most dorsal extension of the cortical bone of the clivus. This is the easiest one to find!
  • Ventral cervicomedullary dura (vCMD). This is the most dorsal point of the ventral margin of the dura at the level of the cervicomedullary junction. I find this point the most difficult to search for and somehow poorly defined, but this is likely due to my scant anatomical knowledge.
  • Posteroinferior cortex of C-2 (PIC2). It is the most dorsal point of the inferior edge of C2.
Figure 2. This is the median slice from the sagittal sections of a T1-weighted magnetic resonance of the head. In blue, the three points used for the measure of the Grabb’s line and of the clival-canal angle. In red, the definitions of rostral, caudal, ventral and dorsal. By Paolo Maccallini.

4. Lines

Connecting the three points found in the previous paragraph allows us to define four lines (figure 3) that will be then used to calculate the Grabb’s mesure and the clival-canal angle.

  • Clival slope (CS). It connects CP to vCMD. It is also called the Wackenheim Clivus Baseline (Smoker WRK 1994).
  • Posterior axial line (PAL). It connects vCMD to PIC2.
  • Basion-C2 line (BC2L). It connects B to PIC2.
  • Grabb’s line (GL). It is the line from vCMD that is orthogonal with BC2L.

We now know all we need in order to take two of the most important measures for the assessment of craniocervical junction abnormalities.

Sagital section 4.jpg
Figure 3. On this middle sagittal section, the points CP, B, vCMD and PIC2 have been reported. Since the sphenooccipital suture is not clearly visible, the point CP has been identified measuring 2 centimetres from B, along the dorsal cortical bone. The lines CS, PAL, BC2L and GL have then been identified. The Grabb’s measure is of 0.8 centimetres while the clival-canal angle is 142°. By Paolo Maccallini.

5. The clival-canal angle and its meaning

The clival-canal angle (CXA) is the angle between CS and PAL. The value of this angle for the individual whose scan is represented in figure 4 is 142°. This angle normally varies from a minimum of 150° in flexion to a maximum of 180° in extension (Smoker WRK 1994). Ence, what we should normally see in a sagittal section from an MR scan of the brain is an angle between these two values. A value below 150° is often associated with neurological deficits (VanGilder J.C. 1987) and it is assumed that a CXA below 135° leads to injury of the brainstem (Henderson F.C. et al. 2019).

It has been demonstrated with a mathematical model that a decrease in the clival-canal angle produces an increase in the Von Mises stress within the brainstem and it correlates with the severity of symptoms (Henderson FC. et al. 2010). Von Mises stress gives an overall measure of how the state of tension applied to the material (the brainstem in this case) causes a change in shape. For those who are interested in the mathematical derivation of this quantity (otherwise, just skip the equations), let’s assume that the stress tensor in a point P of the brainstem is given by

stress tensor.JPG

Then it is possible to prove that the elastic potential energy due to change in shape stored by the material in that point is given by

deviatoric elastic energy.JPG

where E and ν are parameters that depend on the material. Since in monoaxial stress with a module σ the formula above gives


by comparison, we obtain a stress (called Von Mises stress) that gives an idea of how the state of tensions contributes to the change of shape of the material:

Von Mises.JPG

In the brainstem, this parameter – as said – appears to be inversely proportional to the clival-canal angle and directly proportional to the neurological complaints of patients, according to (Henderson FC. et al. 2010). For a complete mathematical discussion of Von Mises stress, you can see chapter 13 of my own handbook of mechanics of materials (Maccalini P. 2010), which is in Italian though.

Figure 4. Left. ME/CFS patient, female. The clival-canal angle is 146° while the Grabb’s measure is 0.8 cm. Right. ME/CFS patient, male. The clival-canal angle is 142° while the Grabb’s measure is about 0.6 cm.

6. The Grabb’s measure and its meaning

The Grabb’s measure is the length of the segment on the Grabb’s line whose extremes are vCMD and the point in which the Grabb’s line encounters the Basion-C2 line. In figure 4 this measure is 0.8 centimetres. This measure has been introduced for the first time about twenty years ago with the aim of objectively measuring the compression of the ventral brainstem in patients with Chiari I malformation. A value greater or equal to 9 mm indicates ventral brainstem compression (Grabb P.A. et al. 1999). In a set of 5 children with Chiari I malformation and/or basal invagination (which is the prolapse of the vertebral column into the skull base) a high Grabb’s measure was associated with a low clival canal angle (Henderson FC. et al. 2010). The CXA only takes into account osseous structures (it depends on the reciprocal positions between the body of the axis and the clivus), so it can potentially underestimate soft tissue compression by the retro-odontoid tissue. This problem can be addressed with the introduction of the Grabb’s measure (Joaquim A.F. et al. 2018). Nevertheless, we can assume that they both measure the degree of ventral brainstem compression, and if you look at figure 3 you realize that as the angle opens up, the Grabb’s measure becomes shorter. Points and lines described in these paragraphs for two more patients are represented in figure 4, while the CXA and the Grabb’s measure for three ME/CFS patients (the one in figure 3 and the two in figure 4) are collected in the table below (OI stands for orthostatic intolerance).

Grabb’s measure Clival canal angle sex age OI
values Ref. values Ref.
P1 0.80 cm <0.90 cm 142° 150°-180° M 39 y Yes
P2 0.80 cm 146° F 50 y Yes
P3 0.58 cm 142° M 23 y Yes

7. Craniocervical instability and ME/CFS

According to some authors, the craniocervical junction is considered to be unstable (craniocervical instability, CCI) in the case of “any anomaly that leads to neurological deficits, progressive deformity, or structural pain”. A clival canal angle below 125° and/or a Grabb’s measure above 9 mm are considered to be predictive of CCI (Joaquim A.F. et al. 2018). Craniocervical instability has been described in congenital conditions like Down syndrome (Brockmeyer D 1999), Ehlers-Danlos syndrome (Henderson F.C. et al. 2019), and Chiari malformation (Henderson FC. et al. 2010) as well as in rheumatoid arthritis (Henderson F.C. et al. 1993).

There are some clues that can potentially link CCI to ME/CFS, as mentioned in the introduction. My interest in this topic aroused some weeks ago because of anecdotal reports of diagnosis of CCI (with subsequent successful surgery, apparently) among ME/CFS patients (R, R), in the absence of formal studies (to my knowledge, at least). And yet there is a substantial overlap between Ehlers-Danlos syndrome hypermobile type (EDS-HT) and ME/CFS, with about 80% of EDS-HT patients meeting the Fukuda criteria (Castori M. et al. 2011) and we know, as mentioned, that CCI is present in Ehlers-Danlos syndrome. Moreover, brainstem abnormalities are well known to be present in ME/CFS, where hypoperfusion (Costa D.c: et al. 1995), hypometabolism (Tirelli U. et al. 1998), reduced volume (Barnden L.R. et al. 2011), microglia activation (Nakatomi Y et al. 2014), and loss of connectivity (Barnden L.R. et al. 2018) in brainstem have been reported. Basal ganglia dysfunction has also been documented in ME/CFS (Miller AH et al. 2014), and this could be an indirect measure of midbrain abnormal functioning, given the connection between substantia nigra (midbrain) and basal ganglia, via the nigrostriatal tract. It is worth mentioning here that vagus nerve infection has been proposed as a feasible cause of ME/CFS (VanElzakker MB 2013) and vagus nerve (the tenth cranial nerve) has its origin in the lower part of the brainstem. Moreover, the presence of CCI in rheumatoid arthritis might be a clue for a causal role of the immune system in this kind of hypermobility. A link between hypermobility and the immune system has been found also in a condition due to the duplication/triplication of the gene that encodes for tryptase (a proteolytic enzyme of mast cells) (Lyons JJ et al. 2016). CCI can lead to orthostatic intolerance (OI), and OI is widely prevalent in ME/CFS.

So, it is not unreasonable to consider pathology of the craniocervical junction to be involved in some cases of CFS-like symptoms. It might be due to some degree of predisposition to hypermobility and/or to abnormal immune activity. These cases would then be aggravated or triggered by infections, as it is often the case in ME/CFS patients. How to properly classify these patients would be just a matter of nomenclature. But as we all know “A rose by any other name would smell as sweet”.





Impedance, the biomarker you wouldn’t expect

Impedance, the biomarker you wouldn’t expect

1. Introduction

In this article, I report on the results from two research groups in which different experimental settings were used to measure electric impedance in blood samples from ME/CFS patients vs healthy controls. One of these studies comes from Stanford University and has been just published in PNAS: it is freely available here. The other one has been presented by Alan Moreau during the NIH conference on ME/CFS, and it is unpublished (R). In paragraph 2 I introduce the definition of impedance, in paragraph 3 you will learn something about the electric behaviour of cells, in paragraph 4 there is a description of the device used by the Stanford University group, in paragraph 5 there are the results of the experiment from Stanford University, in paragraph 6 there is a discussion of these results, in paragraph 7 the results from the other group are reported, and these two studies are compared in paragraph 8. In paragraph 9 I reported on two drugs that have shown the promise to be of therapeutic use in ME/CFS. Other notes follow in the last two paragraphs. If you are not interested in technical details on impedance (or if you don’t need them), go directly to paragraph 5.

2. Impedance

In this paragraph, I try to give a very simple and short introduction to circuits in a sinusoidal regime in general, and to impedance in particular. The main definition that we need, for that purpose, is the so-called Steinmetz transform for a sinusoidal function. Let’s consider the sinusoid

sinusoid function.JPG

where A is called amplitude and is the maximal value that the function can reach, ω is the angular frequency (also called pulsatance) which is an indication of how fast the value of the function changes in time, α is the phase and it gives the indication of what the value of the function a(t) was for t = 0. The Steinmetz transform consists of the univocal association of the sinusoid a(t) with the complex number


also called phasor (which stands for phase vector), where j=√(-1) is the imaginary unity. A complex number can then be easily represented as a vector in the complex plane (see figure 1).

Figure 1. According to the Steinmetz transform, a sinusoidal function can be univocally associated with a complex number which, in turn, can be represented as a vector on the complex plane. Diagrams by Paolo Maccallini.
Figure 2. Left. A generator of voltage is linked to a system (represented by a box) whose electrical properties, as a whole, are described by its electrical impedance. This can be seen as a simplified scheme of the device used by Ron Davis and its team if we assume that the box is the sample (white blood cells incubated with plasma). Right. The impedance of the sample can be seen as a series of a resistor (an electrical component whose only relevant property is its resistance) with a resistance equal to the real part of impedance, and a second electrical component completely characterized by a reactance with a value equal to the imaginary component of impedance. Sketch by Paolo Maccallini.

Let’s now consider the elementary circuit in figure 2 (which is also a simplified model of the device in the study by Ron Davis), where a generator of electrical potential is linked to another circuit (depicted as a box in the figure, on the left) that in our case is represented by the sample of peripheral blood white cells incubated in plasma. But it could be an arbitrarily complex net made up of conductors and what follows would still hold. Let’s assume that the electric current and the voltage of the generator are given respectively by

current and voltage.JPG

We can associate to these sinusoids their respective phasors with the Steinmetz transform, which gives


That said, we define impedance of the sample, the complex number that we obtain dividing the phasor of u(t) by the phasor of i(t):


Impedance describes several physical properties of the box in figure 2. Without going into details (this is beyond the scope of this article) just consider what follows.

  • The real part of impedance represents the resistance of whatever is inside the box of figure 2, which can be seen as its ability to transform electric energy into heat, i.e. kinetic energy at a molecular level. The higher the value of the resistance, the more the ability to generate heat.
  • The imaginary part of the impedance (called reactance) can be positive or negative. When it is positive it indicates the ability of whatever is inside the box to translate a magnetic field into voltage. The higher the positive reactance, the more its ability to generate a voltage from a magnetic field. A positive reactance is also called inductive reactance.
  • When reactance is negative, it means that whatever is inside the box, it has the ability to store energy in an electric field: the higher the absolute value of the reactance, the more the energy stored in an electric field within the box. A negative reactance is also called capacitive reactance.

No matter how complex the system in the box is, its external electrical behaviour is completely characterized by its impedance, which means that the system can also be simplified in a series of an electrical component whose only relevant property is a resistance equal to the real component of impedance, and a second component completely characterized by a reactance with a value equal to the imaginary component of impedance (figure 2, on the right).

3. Impedance of cells

The study of the impedance of cellular cultures is a field that started probably in the early nineties. In a paper from the Rensselaer Polytechnic Insititute (NY), it was demonstrated that the measure of electrical impedance of a single cell layer was more sensitive than optical microscopy for the measure of changes of nanometers in the cell diameter or subnanometer changes in the distance between the cell layer and the electrodes (Giaever I. & Keese CR. 1991). In that pivotal paper, a mathematical model for the impedance of a layer of cells was also proposed and solved, but it is beyond the scope of this article. A simplified electrical model of a cell layer is provided by a parallel of a capacitance due to dielectric properties of the cell membrane, and a resistance due to the cell membrane, to the cytoplasm and to the layer between cells (Voiculescu I. et al. 2018). We can add a resistance for the solution in which cells are incubated and we obtain the circuit in figure 3.

Circuit 2.JPG
Figure 3. A simplified model for the impedance of a cell culture, where a layer of cells is incubated in a substrate. The electrical properties of the layer of cells are described by a parallel of a resistance (due to the cell membrane, cytoplasm and the layer between cells) and a capacitance (due to the dielectric properties of the cell membrane). We then add a resistance for the substrate. Sketch by Paolo Maccallini.

Remember now that the only electrical property that we can directly measure is the total impedance (both the real component and the imaginary one). So we have to find the relationships between these two components and the physical parameters introduced in figure 3. For the equivalent impedance of the sample (see the last paragraph for the mathematical passages) we have:

impedance 3.JPG

The dependence of the real part of Z_cl and of its imaginary component to R_cl and C_cl can be got from figure 4. The absolute value of Z_cl is represented in figure 5.

Figure 4. The real part of Z_cl (left) and its imaginary component (right) as functions of the resitance and the capacitance of the sample introduced in the model in figure 3.
Figure 5. The absolute value of Z_cl.

The capacitance in this formula is due – as said – to the dielectric properties of the plasma membrane. We can see a cell as a spherical capacitor, where two conductive layers (one in the cytoplasm and the other one in the extracellular space) are separated by the outer membrane. The insulating portion of a phospholipid membrane is of about 4.5 nm and it has been found that the capacitance per square cm of the cell membrane is one μF (Matthews GG, 2002). Since the permittivity constant ε is known, we can calculate the dielectric constant κ of a lipid membrane quite easily (see the last paragraph), and we find κ=5.

4. The nanoneedle

The device used for the measurement of the impedance of blood samples from ME/CFS patients is an array of thousands of sensors. Each sensor is made up of two conductive layers, separated by a dielectric material (figure 6). Each sensor is a sinusoid circuit that operates at a frequency of 15 kHz and at a voltage with an amplitude of about 350 mV. In figure 6, I have added the electric scheme for the circuit made up by the sensor itself and the sample, according to what seen in the previous paragraph. I have added some resistances and capacitors for the electrodes, according to (Esfandyarpour R et al. 2014).

Figure 6. The nanoneedle is made up of two conductive layers separated by a dielectric layer. A voltage with an amplitude of about 350 mV and a frequency of 15 kHz is applied to the electrodes. Sketch by paolo Maccallini.

As you can see from the picture, one of the dimensions of the sensor is below one micron, while the other is of about 3 microns. Keep in mind that the diameter of the average white blood cell is of about 15 microns… To me, such a small size makes difficult the application to this system of both the electrical model by Ivar Giaever and Charles Keese and of the simplified one presented in the previous paragraph, which have been designed to describe the behaviour of a layer of cells that grow above an electrode that can harbour many cells on its surface. And in fact, in their paper, Esfandyarpour R. and his colleagues have sketched a different model (R, B), even though they haven’t used it to draw any conclusion or interpretation from the experimental data, yet.

5. The experiment

The measurement of the impedance of samples from ME/CFS patients and controls has been made with an array of thousands of electrodes, each one like the one in figure 6. The system took 5 measures of impedance for second and the experiment on each sample lasted for about 3 hours. The researchers measured, for each point in time, both the real and the imaginary component of the impedance of the sample. They also measured the module of the impedance.

Each sample consisted of peripheral blood mononuclear cells (PBMC) incubated in patient’s own plasma (plasma is blood without erythrocytes, platelets and white blood cells), at a concentration of 200 cells per μL. It might be useful to remember that PBMCs are basically all the white blood cells that are present in peripheral blood but granulocytes, which have multi-lobed nuclei and, as such, are not “monuclear”.

The researchers drew blood from 5 severe patients, 15 moderate patients (diagnosed by a physician according to the Canadian Consensus Criteria) and 20 healthy controls, with 5 of them age- and gender-matched to 5 of the ME/CFS patients.

About 20 minutes were required for the impedance to reach a steady state (the baseline level, characterized by swings in impedance below 2% of its value). The measures for each sample have been divided by the value of impedance at the baseline. This is the reason why the baseline has a value of 1 in the diagrams. After the steady state was reached, the researchers added 6 μL of NaCl to the samples. After a transient reduction in impedance, the samples from healthy controls returned to the baseline value. In samples from patients, the initial reduction in impedance after NaCl introduction was followed by a dramatic change in both the real component and the imaginary component of impedance. The normalized real part, in particular, had an increase of 301.67% ± 3.55 (see figure 7 and R).

Figure 7. The real part of the impedance. ME/CFS patients are in red, while controls are in blue. From the speech by Ron Davis during the NIH conference on ME/CFS (R).

6. What does it mean?

In the experiment by Stanford University, they added NaCl to the samples and this likely led to the activation of the sodium-potassium pump that requires a molecule of ATP in order to transport 3 Na ions outside the cells (and two K ions inside). This would be the only way for these cells to maintain the correct intracellular concentration of sodium, pumping out those Na ions that found their way to the cytoplasm from the plasma. This is like putting a cell on a stationary bike. What the experiment says is that this effort made by the cells to maintain homeostasis leads to huge changes in the electrical properties of the samples from ME/CFS patients, while producing virtually no changes in the samples from healthy controls. But what is the origin of the change in impedance?

If we consider the electrical model that I have proposed in figures 3 and 6 and looking at figure 4 (left), we might hypothesise that the change comes from a reduction in the capacitance C_cl  which is due to the dielectric properties of cell membranes. A change in composition in these membranes could lead to a reduction in C_cl and thus to the observed increase in the real component of the total impedance. This might perhaps be linked to the reduction in the metabolism of the main components of the plasma membrane (sphingolipid, phospholipid and glycosphingolipid) in patients vs controls previously reported in a metabolomic study (Naviaux R et al. 2016). A reduction in the dielectric properties of cell membranes could also explain the increase in the module of impedance observed in this study (see figure 5). But it is worth noting again that the model I used for the description of the electrical properties of the sample is a hugely simplified version of the one proposed in (Giaever I. & Keese CR. 1991) and it has been developed for electrodes that are many times larger than the one used by Esfandyarpour R and colleagues. As said elsewhere, the authors have proposed a different, more complex, electric circuit (R, B) and they wrote that the process of using it to interpret the experimental data is currently on-going. But they did note that a change in plasma membrane composition might be responsible for the observed change in impedance, in one point of the article, among other possible explanations.

A release of molecules (cytokines?) from the PBMCs into the plasma might also be the cause of the change in impedance, but if we assume that our model in figure 3 is reliable, these molecules would only change the value of R_su, so the imaginary component of the impedance would not be affected, while we know that there is a change in that component too. But again, our model is a very simplistic one.

A change in the shape or size of the cells would lead to a change in C_cl. But the authors observed the samples in standard live microscopy imaging and they were not able to record any significant cell size difference in samples from ME/CFS patients vs samples from healthy controls.

7. Canadian impedance

During the NIH conference on ME/CFS, the Canadian group led by Alan Moreau, presented, at the end of a speech about microRNAs, a measure of impedance on immortalized T cells incubated with plasma from healthy controls, plasma from ME/CFS patients, and plasma from patients with idiopathic scoliosis (figure 8) and, as you can see, there is an increase in impedance with the increase in plasma concentration only in the second group (R). This measure has been made with the CellKey system, after stimulation of cells with G-coupled protein receptors agonists (Garbison KE et al. 2012). It is also worth mentioning that this impedance is the one due to the flow of charges in the extracellular space and that it seems to be the module of impedance, rather than the real or the imaginary part.

Figure 8. Measure of electrical impedance in immortalized T cells incubated in plasma from healthy controls (CTRL), from ME/CFS patients (EM) and from patients with idiopathic scoliosis, at increasing concentrations of plasma (R).

Alan Moreau also noted that if we subgroup ME/CFS patients according to differences in circulating microRNA, we find that plasma from two of these groups leads to an increase in impedance while plasma from three other groups induces a decrease in impedance, if compared with T cells incubated with plasma from healthy controls (figure 9).

Figure 9. The same experiment as in figure 8, but here patients are divided into subgroups according to the content in microRNA in their blood (R).

8. The X factor

Even though the Canadian experiment is not directly comparable to the one from the Stanford University group, nevertheless it is a partial confirmation of that result. Moreover, since in the Canadian experiment the cells are the same for all the groups (it is a line of immortalized T cells) and what changes is only the plasma they are incubated in, we can say that the origin of the electrical shift in these samples is something that is present in the plasma of patients (an X factor) and it might be due to the interaction between this X factor and cells. This interpretation is in agreement with a previous observation from a Norwegian group who incubated muscular cells in serum from 12 patients and from 12 healthy donors: they found an increase in oxygen consumption and in lactic acid production in cells incubated with sera from patients vs cells incubated with sera from healthy controls. This experiment was performed using the Seahorse instrument (Fluge et al. 2016). It is worth noting that in this case only serum was used, and serum is plasma without clotting factor.

Figure 10. When PBMCs from patients are incubated in plasma from healthy controls, the impedance is normal; when, on the other hand, cells from healthy controls are incubated in plasma from ME/CFS patients, the impedance increases. So, the increase is due to an interaction between plasma from patients and cells, no matter if the cells come from healthy individuals or from patients (R).

The idea of an X factor present in plasma (or serum) of patients is even more suggestive if we take into account the unpublished result presented by Ron Davis during the NIH conference, called the “plasma swap experiment”, performed with the nanoneedle device (R). As you can see from figure 10, the increase in impedance happens only when cells are incubated with plasma from ME/CFS, no matter whether the cells are from healthy controls or from ME/CFS patients.

It is extremely important here to note that several filtrations of the plasma from patients have been made by the Stanford Group in order to discover what the X factor is: they have concluded that it is neither a metabolite nor a cytokine. Alan Moreau noted also that it is probably not an antibody. It turned out that it might be an exosome, a vesicle released by cells which contains – among other molecules – microRNA molecules. As Ron Davis said: “I guess that the signal is coming from damaged mitochondria, but it is only a guess” (R).

9. Drug testing

The authors of the study on the nanoneedle device are interested in using it for drug testing. Ron Davis reported during the last Emerge Australia conference (R) that two compounds are able to reduce the alteration in impedance seen in PBMCs incubated with plasma from patients: Copaxone, a peptide currently used in the treatment of multiple sclerosis, and SS31, a molecule not available yet, that can scavenge mitochondrial reactive oxygen species (ROS), thereby promoting mitochondrial function (Escribano-Lopez I. et al. 2018), (Thomas DA et al 2007).

Figure 11. Two drugs seem to reduce the increase in impedance in cells incubated with plasma from ME/CFS patients (R).

10. Limitations of the study from Stanford University

Even though the differences observed in the electric properties of the samples from ME/CFS patients vs controls, after the addition of the osmotic stressor, are striking, there are some potential limitations that ought to be mentioned.

  • Only 5 of the 20 healthy controls were age and gender-matched to 5 ME/CFS patients. So the difference observed might be due, at least in part, to age or gender.
  • The difference in impedance might be due to some consequence of the disease, like deconditioning, since the healthy control was not a sedentary one.

11. Mathematical notes

The calculation of the impedance Z_cl of the sample (figure 3) is as follows:

impedance 2Then you have to add the resistance R_su to the real part and you obtain Z_tot. In order to calculate the dielectric constant of the lipid membrane just follow these passages:

dielectric constantIn order to choose the range of variation for C_cl and R_cl in the diagrams in figures 4 and 5, I calculated the capacitance of a cell, assuming a spheric shape, a radius of 5 μm, a capacitance for square cm of 1 μF, a thickness of the plasma membrane of 4.5 nm, and a dielectric constant κ=5. This gives


I then found the value of the imaginary component of the impedance of a culture of yeast cells measured by the nanoneedle, which is 800 kΩ and I set the angular frequency at 2π·15 kHz (which is the frequency of the generator of voltage of the nanoneedle). Then we have a reference value for resistance too:

Cellular resistance.JPG

The simple code (Matlab) that I used to plot the diagrams in figure 4 and 5 is the following one.

% file name = impedance
% date of creation = 4/05/2019
clear all
% we define the angular frequency
w = 2*pi*15*(10^3)
% we register the array of the capacitance axis (pico Farad)
c_span = 4.;
delta_c = c_span/30.;
n_c = c_span/delta_c;
% we register the array
c(1) = 0.;
for i = 2:30+1
c(i) = c(i-1) + delta_c;
% we define the array of resistance (mega Ohm)
r_span = 9.;
delta_r = r_span/30.;
n_r = r_span/delta_r;
r(1) = 0.;
for i = 2:30+1
r(i) = r(i-1) + delta_r;
% we register the array of the real part and of the imaginary part of impedance and its module
for i=1:n_c
for j=1:n_r
Rcl = r(j)*(10^6);
Ccl = c(i)*(10^(-12));
Z_r (i,j) = Rcl/( 1 + ( (Rcl^2)*(w^2)*(Ccl^2) ) );
Z_i (i,j) = (-1)*( w*Ccl )/( ( 1/(Rcl^2) ) + (w*Ccl)^2 );
Z_m (i,j) = sqrt( (Z_r (i,j)^2)+(Z_i (i,j)^2) );
% we plot the real part of the impedance
mesh(r(1:n_r), c(1:n_c), Z_r(1:n_c,1:n_r));
grid on
ylabel(‘capacitance (pico Farad)’);
xlabel(‘resistance (Mega Ohm)’);
legend(‘Real part of Impedance’,”location”,”NORTHEAST”);
% we plot the imaginary part of the impedance
mesh(r(1:n_r), c(1:n_c), Z_i(1:n_c,1:n_r));
grid on
ylabel(‘capacitance (pico Farad)’);
xlabel(‘resistance (Mega Ohm)’);
legend(‘Imaginary part of Impedance’,”location”,”NORTHEAST”);
mesh(r(1:n_r), c(1:n_c), Z_m(1:n_c,1:n_r));
grid on
ylabel(‘capacitance (pico Farad)’);
xlabel(‘resistance (Mega Ohm)’);
legend(‘Module of Impedance’,”location”,”NORTHEAST”);

Il segreto di Mosè

Il segreto di Mosè

Quello che segue è un frammento proveniente dagli appunti per un romanzo che tentavo di scrivere nel 2006. Il romanzo non fu mai compiuto, anche lui vittima della malattia. Ma alcuni anni dopo utilizzai parte del materiale già scritto per una storia breve, intitolata “Il flauto di Turk” (disponibile qui). Altri passaggi di quegli appunti, come questo, reclamano da anni una vita propria.

Sono circa le tre del mattino e mi trovo nel corridoio del reparto di Seconda Medicina, seduto sotto la statua della Vergine, l’unico caso di donna mediorientale con le sembianze di una biondissima scandinava. Nel pomeriggio di ieri un paio di persone sono venute davanti a questa statua per pregare, per chiedere con tutta probabilità la guarigione di un congiunto. Fissavano la statua, questa dea bellissima vestita di azzurro, divinità e fata. Dal piedistallo lei guardava in basso, congelata nell’accenno di un abbraccio irraggiungibile. Guardava in basso, un punto indefinito del pavimento, lungo una direzione difficile da intercettare, con un sorriso di porcellana, il sorriso di una di quelle vecchie bambole dal viso dipinto.

Mi è sembrato che queste due persone se ne siano andate insoddisfatte, forse infastidite da un simulacro così palesemente falso, un personaggio di plastica dei giochi delle bambine. Ma forse mi sbaglio, ho proiettato sui loro visi la mia indifferenza nei confronti di una religiosità che in fondo usa esattamente lo stesso repertorio iconografico dei culti di ogni tempo e di ogni luogo: Zeus, Apollo ed Era hanno cambiato solo il nome e il sentimento religioso ha mantenuto sempre gli stessi connotati poiché l’Umanità in fondo è rimasta la stessa: il gesticolare dei sacerdoti è ancora il rituale dello sciamano mentre le parole rivoluzionarie di quell’uomo che mendicava il pane, in Galilea, sono finite intrappolate in formule da ripetere a memoria.

Queste riflessioni mi riportano a ciò che è successo ieri, al motivo per cui sono finito qui. Allora metto un foglio su un tavolino solitario, abbandonato a pochi metri dalla dea, e inizio a scrivere, a ricostruire quello che è successo, in compagnia di una statua fredda, ben diversa da quella che ieri mi ha travolto.


Uscito dalla Facoltà di Ingegneria mi sono diretto verso la Chiesa di San Pietro in Vincoli, che sorge adiacente all’edificio universitario, in fondo a un piccolo largo. Ho attraversato la piazzetta sguarnita, da cui si innalza una breve rampa di scale, sormontata da un portico buio. Circondato da grate scure e fitte, che lo preservano da un rapporto diretto con la luce del giorno, esso costituisce tutto ciò che si scorge del luogo di culto dall’esterno. Oltre il colonnato del portico mi sono lasciato alle spalle l’atmosfera tiepida e leggermente ventilata di questi giorni, per ritrovarmi avvolto da un’aria stantia e umida, da una luce malata, indebolita e smembrata dal diaframma della trama metallica e dei pilastri. Quell’ambiente rappresenta una camera di decompressione, una tappa necessaria per sfumare il passaggio dal contingente, che ci lasciamo alle spalle, all’eterno, che ci aspetta terribile oltre le piccole porte lignee, consumate da un fiume secolare di mani.


Porte piccole per accedere a un locale molto ampio: l’improvviso cambio di scala è un espediente efficace, usato nei luoghi di culto per sopraffare il fedele, per nutrire il suo smarrimento, il suo sentimento di inadeguatezza e di miseria. In fondo il nucleo geometrico delle nostre chiese è ispirato a una religiosità antica, pagana, che si inoltra profondamente nella memoria delle generazioni sepolte. Nel ruotare di un’anta si manifesta dinnanzi a me tutta l’ampiezza della navata centrale, in parte nascosta dal buio e dunque, per quello che si potrebbe definire “effetto Leopardi”, ancora più smisurata, quasi infinita. Davanti ai miei piedi trovo una vasta superficie di pavimento assolutamente libero – i primi scranni sono molti metri dinanzi – senza punti di riferimento; sopra il mio capo si svela un cielo improvvisamente altissimo.


Conosco il potere suggestivo di questa sapiente gestione dello spazio e della luce, eppure ciò non basta a evitare che mi senta toccato, con addosso un disagio vago, una vertigine. Mi affretto verso una navata laterale, per godere del sollievo dato da un ambiente più a misura d’uomo. Le navate laterali servono a questo in fondo: sono un percorso protetto, una corsia di emergenza, un posto tranquillo dove sottrarsi alla sfacciata ostentazione di grandezza dell’Onnipotente.

Ero nella navata destra dunque, ma non ero tranquillo, perché sapevo che qui, in questa chiesa, la navata destra non è un posto dove potersi sottrarre alla voce dell’Eterno. Ho camminato col cuore in gola, lungo il corridoio scandito dalle ombre delle colonne, che tagliano il chiarore pallido dei lucernai sperduti nelle altezze della navata di mezzo. Luci e ombre. Vogliamo dire che lo spazio architettonico in cui mi trovavo aspiri a essere una metafora della nostra vita mortale? È così. L’esistenza stagna a volte in torbide paludi di oscurità dove molti purtroppo indugiano per sempre; per altri c’è invece la rinascita che nella sua commovente bellezza ripaga di ogni pena. Diciamo allora che il percorso che facevo, sotto gli sguardi pietosi dei santi, voleva essere un augurio, una metafora piena di speranza: luce, ombra, luce…


Pellegrino umile, incerto, mi sono avvicinato alla fiamma potente imprigionata nel contesto angusto e modesto del monumento funebre a papa Giulio Secondo. Con lo sguardo basso, cercando il coraggio di guardare il terribile vortice di marmo, avvolto in una poderosa spirale, ho posato le mani e gli occhi sulla balaustra, unica, misera protezione offerta al visitatore contro il tremendo gigante.

Anche senza osservarlo ne ho avvertito la presenza, nell’aria. Al suo cospetto l’atmosfera vibra in ogni molecola, come se fosse scossa dalle più basse note di un organo titanico. Un parapetto sottile, alto non più di un metro. Che protezione può dare contro la forza di quel corpo maestosamente avvitato, di quelle membra massicce?


Ho cominciato ad alzare il viso, con molta prudenza. Radici tenaci di una quercia millenaria appaiono le falangi del piede disumano, che scarica al suolo un peso grandioso. La tibia è vigorosamente avvolta da fasci nodosi e solidi di muscoli. Vedo statica forza, resa dinamica dal panneggio di una veste essenziale, dal tessuto spesso, pesante. Articolazioni robuste, tendini come corde navali, rete di turgidi vasi sanguigni: ho osservato mani come quelle stringere pale nei cantieri, o cime sui bastimenti. Riposano enormi, come il corpo massiccio, fissato nel marmo, dell’Ercole Farnese.


Il torace, immortalato in una vigorosa maturità, alimenta gli omeri spaventosi, gli avambracci, duri rami di un ampio tronco di noce. La barba è una vertigine che riempie lo spazio, agitandolo, creando flussi potenti.


Mi sono fatto animo e ho affrontato il capo del mostro, completamente dimentico ormai del motivo per cui ero lì, delle vicende di quella mattina; fuori dal tempo, oltre me stesso. La fronte corrucciata, sporgente e ossuta, è l’icona della volizione. Lo sguardo emerge infuocato dalla sinistra oscurità delle orbite profonde, incorniciato da zigomi spigolosi e larghi, siberiani.


Il visitatore è indegno dell’attenzione del gigante, è solo un’insignificante e passeggera perturbazione dell’eternità, dimensione alla quale egli appartiene. Personificazione della volontà, Mosè esige l’inchino del destino stesso.

Io dico che quel viso è riconosciuto da tutti come famigliare, da qualunque nazione si provenga, qualunque sia l’etnia e la cultura di appartenenza. È un’immagine terribile che traspare dalle acque dei ricordi degli anni più teneri, quelli in cui il piano del tavolo della cucina segnava i limiti della nostra statura, del nostro universo tattile. È il volto del papà, contrariato per quella cornice che abbiamo rotto mentre giocavamo con la palla. Del padre, il gigante delle meraviglie, dei disegni favolosi eseguiti per noi, mentre ci teneva sulle ginocchia; delle ombre fatte con le mani, sul muro della nostra cameretta, per farci addormentare.

Il Mosè incarna quest’uomo. O meglio, il suo lato oscuro, il suo potere di terrorizzare, solo con la minaccia di una punizione. Il suo potere assoluto. Mosè: il padre, il gigante padrone del mondo, poeta e demiurgo. E orco.

Ma la vita è contorta, fin nella sua più intima fibra, come le eliche che archiviano il progetto di ciascuno di noi, nelle cellule. Michelangelo questo lo sapeva e non poteva nasconderlo, neanche in questo suo monumento alla forza.

Ero perduto davanti a quella magnifica epifania, quando comincio a penetrare nel mistero che giace dietro alla prorompente carica vitalistica della statua. Ho una rivelazione sconvolgente: il gigante è impotente, ripiegato su se stesso. La sua forza si disperde tutta nell’attrito prodotto dai vortici che lo avvolgono e dalla tensione della sua torsione. Egli non riesce ad andare da nessuna parte, si agita violento, ma non conclude nulla. È il corpo di un serpente a cui è stato mozzato il capo: soffoca se stesso avvitando le spire, sfogando tutta la sua energia vitale in una terribile agonia.

Dietro la divinità avevo scoperto la miseria dell’uomo. Mi ha investito allora una marea potente di angoscia e mi sono ritrovato io stesso nell’incubo dello scultore. Il terrore di non poter concludere positivamente il mio lavoro, di non riuscire a dare un senso alla mia vita, mi stava soffocando. Oppressione toracica, angoscia indefinita, palpitazioni. La vista si stava sfocando, come dietro a un velo di lacrime. Con un’emissione impercettibile di fiato ho sussurrato:

Tutti i fiumi scorrono verso il mare
e il mare non si empie mai;
sempre i fiumi tornano a fluire
verso il luogo dove vanno scorrendo.
Ogni discorso resta a mezzo,
ché l’uomo non riesce a concluderlo.

Era la Bibbia, lo sconvolgente libro di Qohèlet.


Cosa ci fa un rubicondo tedesco sopra di me? Sta sventolando una cartina sul mio viso, mentre versa nella mia bocca una bevanda fresca, con un sapore intenso. Sono disteso supino sulla scalinata davanti alla chiesa, al centro di un gruppetto di turisti teutonici che mi fissano preoccupati. Io sono confuso e debolissimo e istintivamente bevo dalla lattina poggiata sulle mie labbra, mentre guardo il viso paonazzo che mi incoraggia premuroso, accennando un sorriso. Bevo diligentemente, un sorso alla volta, mentre qualcuno mi sostiene il capo. Bevo, bevo. Ma cosa? Sento la testa dolermi e girami. Per Giove è birra! Razza di …

Non ho neanche la forza di protestare, inoltre ormai è troppo tardi. Sorrido al mio salvatore e ricado nel buio. Io non tollero l’alcool, sono totalmente astemio.

Quando rinvengo, mi ritrovo in un letto d’ospedale, con indosso un camice indecente, aperto sulla schiena. Mi hanno detto che sarò dimesso domani, dopo il giro dei medici.


On the module of random vectors

On the module of random vectors

“I have hopes of being able to achieve

something of value through my current studies or

with any new ideas that come in the future.”

J. F. Nash

The bridge over the Arno

In 1999 I was wandering in Pisa with a booklet in the pocket of a worn coat, too short for my frame. It was dark blue on the outside, green and red inside, with a mended sleeve and an austere cowl: I was much like a young monk, with his holy book (figure 1). I can remember neither its title nor the author, though. It was an introduction to statistical thermodynamics, with beautiful figures, a coloured cover, and less than 100 pages. It contained the work by Maxwell on the kinetic theory of ideal gasses, along with other material. I borrowed it from the University Library because I was fascinated by the way in which Maxwell was able to describe the properties of gasses with just a few hypotheses and some relatively easy mathematical passages. I felt that there was an enormous attractive in these methods, I realized with pleasure that math could give the power to completely understand and hold in hand physical systems and even, I started speculating, biological ones.

Analisi, coraggio, umiltà, ottimismo.jpg
Figure 1. A small self-portrait I drew in 1999 in an empty page of my pocket-sized French dictionary.

My second favourite composer back then was Gustav Mahler (the favourite one being Basil Poledouris): he represented my own way to classical music and I chose him because he wasn’t among the musicians my father and my brother shared a love for. I felt, during my teens, that I had to find my private space, and I met it one day on a used book stand: a cassette tape of Das Lied von The Erde, with a few sheets containing the translation to Italian of the songs. Mahler was born in 1860, a few weeks after Maxwell published his pivotal work about ideal gasses in The London, Edinburgh, and Dublin Philosophical Magazine and Journal of Science (R) (figure 2). But in 1999 I was repeatedly listening to a CD with a collection of songs sung by Edith Piaf and Charles Trenet, because I was studying French, and I was having a hard time with pronunciation. So, imagine a secular monk in his prime who listens to old French songs while keeping one hand on a book of statistical thermodynamics hidden in his pocket, wherever he goes, wandering in the streets of Pisa, a city which gave birth to Galileo Galilei. This seems a beautiful story, much like a dream, right? Wrong.

Figure 2. Original cover of the journal in which Maxwell published his work on the kinetic theory of ideal gasses.

I had already started my struggle against the mysterious disease that would have completely erased my life in the following years. In the beginning, it had a relapsing-remitting course, so I could sometimes host the hope that I was recovering, only to find myself caught by the evil curse again. At the end of the year 1999, I was losing my mind, I knew that and I was also aware that my holy book couldn’t save me. I clearly remember one evening, I was walking on Ponte di Mezzo, a simple and elegant bridge above the Arno, and I felt that I couldn’t feel sorrow for the loss of my mind: I realized that not only the functions of my brain assigned to rational thinking were gone, but my feelings couldn’t function properly either. In fact, I noted without a true manifestation of desperation that I had lost my emotions. One day, after spending in vain about eleven hours on a single page of a textbook of invertebrate palaeontology, I accepted that I couldn’t read anymore, at least for the moment.

Had I known for sure that I wouldn’t have recovered in the following twenty years, I would have quite certainly taken my own life, jumping from a building; a fate that I have been thinking about almost every day ever since. I considered this possibility during the endless sequence of days in which there has been nothing other than the absence of my thoughts.

The distribution of velocities of an ideal gas and the one hundred years gap

In the already mentioned paper by Maxwell, he derived the probability density of the speed of the molecules of a gas, granted that the three components of the vector of speed are independent random variables (hyp. 1) and that they share the same density (hyp. 2), let’s say f. Moreover, the density of the speed has to be a function only of its module (hyp. 3). These three hypotheses together say that there is a function Φ such that


This is a functional equation (i.e. an equation in which the unknown is a function) whose solution is not detailed in Maxwell’s work. But it can be easily solved moving to polar coordinates (see figure 3) and deriving with respect to θ both members (the second one gives naught since it depends only to the distance from the origin).

space of velocities.png
Figure 3. The space of velocities and its polar coordinates.

Another way to solve the functional equation is to use the method of Lagrange’s multipliers, searching for the extremes of the density of the velocity, when its module is fixed. In either case, we obtain the differential equation:

differential equation.png

which leads to the density for each component of the speed:


where σ can’t be determined using only the three hypotheses mentioned above. Considering then the well-known law of ideal gasses (pV=nRT) and an expression for p derived from the hypothesis that the collisions between the molecules of gas and the container are completely elastic, Maxwell was able to conclude that:


where m is the mass of the molecule of gas, T is the absolute temperature and K_B is the Boltzmann’s constant. It was 1860, Mahler’s mother was going to deliver in Kaliště, Charles Darwin had just released his masterpiece “On the origin of species”, forced to publish much earlier than what he had planned because of the letter he had received from Wallace, in which he described about the same theory Darwin had been working on for the previous 20 years. In the same point in time, Italy was completing its bloody process of unification, with the Mille expedition, led by Giuseppe Garibaldi.

But the functional equation I have mentioned at the beginning of this paragraph has brought with it a mystery for years, until 1976, when an employee at General Motors Corporation published a short note in the American Journal of Physics [R] in which he showed how Maxwell’s functional equation is, in fact, an example of the well known Cauchy’s functional equation:


In order to prove that, you just have to consider the following definition:


given that


The name of the mathematician who made this observation is David H. Nash, and he has the merit of finding something new in one of the most known equation of physics, an equation that is mentioned in every book of thermodynamics, an equation that has been considered by millions of students in more than a century. It was 1976, my mother was pregnant with my brother; Alma, Gustav Mahler’s wife, had died about ten years before.

Figure 4. A sphere with a radius of z. The integrals of the density of within this sphere has the obvious meaning of the repartition function of Z.

Module of random vectors

Once Maxwell found the density of probability for each component of the speed of the molecules of an ideal gas, he searched for the density of the module of the speed. There is a relatively simple way of doing that. With the following notation


we have that the repartition function of Z is given by the integrals of the density of X within the sphere in figure 4. We have:

repartition function.PNG

The second expression is the same as above but in polar coordinates. Then we can obtain the density of Z by derivation of the repartition function. And this method can be extended to an m-dimensional space. This was the method used by Maxwell in his paper. And yet, there is another way to obtain the expression of the module of a random vector: I have explored it in the last months, during the rare hours in which I could function. By the way, only in the Summer of 2007 I was able to study the kinetic theory by Maxwell, eight years after I borrowed the holy book. Such a waste.

The hard way towards the density of the module of a random vector

When a student starts studying statistics, she encounters a list of densities: the normal distribution, the gamma distribution, the exponential distribution etc. Then there are several derived distributions that arise when you operate sums, roots extractions etc. on random variables. In particular, if f_X is the densty of X and Y = X², then we have


On the other hand, if Y = √X we have


Another important result that we have to consider is that given

linera combination.PNG


linear combination 2.PNG

By using these results I have been able to find that the expression of the density for  the module of an m-dimensional random vector is:


In particular, for m = 3 we have

module 2.PNG

Bessel surface.PNG
Figure 5. A plot of the modified Bessel function.

The case of normal random vectors: the modified Bessel function

In particular, if the random vector has dimension 3 and its components are normal random variables with the same expected value and variance, we have that the density of its module is given by

modulo normale.PNG

where I_0 is the modified Bessel function, which is one solution of the differential equation:

Bessel equation.PNG

whose name is modified Bessel equation. The integral expression of the modified Bessel function is:

Bessel function.PNG

I have coded a script in Matlab which integrates numerically this function (available here for download) which plots the surface in figure 5 and also gives the following table of values for this function.

Bessel table.PNG

The following is the flowchart of the script I coded.

flux chart.png

The case of normal random vectors with a naught expected value: the upper incomplete gamma function

If we consider random variables with an average that is zero (this is the case with the components of speed in ideal gasses), then the density is given by

Chi 3 scaled.PNG

which is a Chi distribution with 3 degrees of freedom, scaled with a scale parameter given by s = 1/σ. In the expression of the repartition function, ϒ is the lower incomplete gamma function, which is defined as follows:

incomplete gamma.PNG

I have written a code for its numerical integration (available here for download), the output of which is in figure 6.

lower incomlete.PNG
Figure 6. Lower incomplete gamma function.
maxwell surface.PNG
Figure 7. Maxwell-Boltzmann distribution for N2 in function of temperature and speed.
maxwell surface 2.PNG
Figure 8. Maxwell-Boltzmann distribution for Helium, Neon, Argon, at room temperature.

Conclusion, twenty years later

The density of the module of the velocity of the molecules of an ideal gas is, in fact, a scaled Chi distribution with 3 degrees of freedom, and it is given by


It can be numerically integrated with the following script I made for Octave/Matlab, which gives the plot in figure 7. Another similar script gives the plot in figure 8. These plots represent the Maxwell-Boltzmann distribution, the centre of the holy book that an unfortunate boy was carrying in his pocket, all alone, some twenty years ago. He could have easily died by his own hand in one of the several thousand days of mental and physical disability that he had to face alone. Instead, he has survived. Had it been only for finding the Maxwell-Boltzmann distribution following another path, it would have been worth it. But he has found much more, including a bright girl, the magnificent next stage of evolution of human beings.


% file name = legge_Maxwell-Boltzmann_2

% date of creation = 22/02/2019

% it plots the density and the distribution function for the

% Maxwell-Boltzmann distribution considered as a function of temperature

% and speed

clear all

% we define some parameters

K_B = 1.381*10^(-23)                                                 % Boltzmann’s constant

m = 4.65*10^(-26)                                                     % mass of the molecule N_2

% we define the array of temperature from 0° C to 1250° C

T (1) = 273.15

for i = 2:1:1250

T (i) = T (i-1) + 1.;


% it defines f_gamma in 3/2

f_gamma = sqrt(pi)/2.

% delta of integration

delta = 1.0

% it defines the array for the abscissa

z (1) = 0.;

for i = 2:1:2500

z (i) = z(i-1)+delta;


% it defines the density

for j = 1:1:1250

% it defines a constant

c = ( m/(K_B*T(j)) );

for i = 1:1:2500

f (j,i) = ( c^1.5 )*sqrt(2./pi)*( z(i)^2. )*( e^( -0.5*c*z(i)^2. ) );


% it calculates the ripartition function for He

F (j,1) = 0.;

F (j,3) = F (j,1) + delta*( f(j,1) + ( 4*f(j,2) ) + f(j,3) )/3;

F (j,2) = F (j,3)*0.5;

for k=2:1:2500-2

F (j,k+2) = F (j,k)+delta*( f(j,k)+( 4*f(j,k+1) )+f(j,k+2) )/3;



% It plots f and F

figure (1)

mesh(z(1:100:2500), T(1:100:1250), f(1:100:1250,1:100:2500));


xlabel(‘speed (m/s)’);

ylabel(‘temperature (Kelvin)’);

grid on

figure (2)

mesh(z(1:100:2500), T(1:100:1250), F(1:100:1250,1:100:2500));


xlabel(‘speed (m/s)’);

ylabel(‘temperature (Kelvin)’);

grid on



The dark matter of medicine

Most of the mass of the universe consists of dark matter. And we can recognize its existence only indirectly: we see its gravitational effects, the acceleration of other known constituents of the universe. In the same way, we know of the existence of ME/CFS mainly form its effects: huge damages in the lives of patients affected.

Physicists are now trying to identify the exact nature of dark matter and they are excited by this new field. Unfortunately, physicians don’t always share the same excitement when it comes to investigating the “dark matter of medicine”.

False positive IgM tests in infectious and autoimmune diseases

False positive IgM tests in infectious and autoimmune diseases


IgM tests present a high rate of false positive results. This can lead to misdiagnosis, inappropriate treatments, and lack of treatment for the true aetiology (Landry ML. 2016). In the following table, I have collected several well-documented cases of IgM tests falsely positive for an infectious disease. In most of these studies, the cause of the false positive result was found to be either another acute infection or autoantibodies, including rheumatoid factor (RF), an IgM that binds to the Fc region of IgG. So it might be important to determine the exact origin of a false positive IgM test, in cases where a diagnosis is hard to find: it could be the clue that ultimately leads to the true aetiology.

IgM falsely positive for: True aetiology N. of cases Reference
Hantavirus IgM

Nombre virus IgM

Adenovirus 1 Landry ML. 2016
Measles virus IgM Sulfa drug allergy 1 Landry ML. 2016
HAV IgM CHF 1 Landry ML. 2016
HEV IgM HAV (IgM+) 1 Landry ML. 2016
HSV IgM VZV (IgM+) 1 Kinno R. et al. 2015
VZV (IgM+) 11/50 Ziegler T. et al. 1989
Parvovirus B19 (acute) 5/65 Costa E. et al. 2009
RF 9/50 Ziegler T. et al. 1989
RF 1 Pan J. et al. 2018
Anti-HDF 2/50 Ziegler T. et al. 1989
HSV-2 IgM HSV-1 1 Landry ML. 2016
VZV Anti-HDF 5/74 Ziegler T. et al. 1989
HSV (IgM+) 8/54 Ziegler T. et al. 1989
RF 8/54 Ziegler T. et al. 1989
EBV VCA IgM CMV (IgM+) 1 Landry ML. 2016
CMV (IgM+) 7/50 Aalto MS et al. 1998
B. burgdorferi (IgM+) 2 Pavletic A. Marques AR. 2017
HEV (IgM+) 33,3% Hyams C et al. 2012
CMV IgM HEV (IgM+) 24,2% Hyams C et al. 2012
Anti-HDF 10/75 Ziegler T. et al. 1989
RF 3/75 Ziegler T. et al. 1989
WNV IgM HSV-2 1 Landry ML. 2016
B. burgdorferi IgM

(OspC and/or BmpA)

HSV 2 (IgM+) 1 Strasfeld L. et al. 2005
VZV (acute) 5/12 Feder HM. et al. 1991
EBV (acute) 14/58 Goossens HA. et al. 1998
CMV (acute) 13/58 Goossens HA. et al. 1998
Mycoplasma IgM WNV (IgM+) 1 Landry ML. 2016

List of abbreviations. CHF, congestive heart failure; CHIK virus, Chikungunya virus; CMV, cytomegalovirus; EBV, Epstein-Barr virus; HAV, hepatitis A virus; HDF, human diploid fibroblast cells; HEV, hepatitis E virus; HIV, human immunodeficiency virus; HHV-6, human herpesvirus type 6; HSV, herpes simplex virus; RF, rheumatoid factor; VZV, varicella-zoster virus; WNV, West Nile virus.

Cross-reactivity with other pathogens

One possible cause for false positive results is cross-reactivity between antigens that belong to different pathogens. A little-known example of this phenomenon comes from the research on ME/CFS: in the study that ultimately ruled out the involvement of XMR virus in the pathogenesis of ME/CFS, antibodies to that pathogen were found in about 6% of both cases and healthy controls, whereas the molecular testing turned out to be negative in all participants (Alter HJ. et al. 2012). So, sera reactivity to XMRV is likely due to a relatively common pathogen that has an antigen similar to another one belonging to XMRV.

In one case of false positive HSV IgM due to VZV infection, the serum/CSF IgM ratio as a function of time had the same profile for both the viruses, suggesting cross-reactivity (Kinno R. et al. 2015). Cross-reactivity between HSV IgM and VZV IgM seems quite common, with both false positive HSV samples due to reactivity to VZV and false positive VZV IgMs due to IgM against HSV (Ziegler T. et al. 1989).

Interestingly enough, although OspC is considered to be a highly specific antigen of B. burgdorferi, OspC IgM is often positive in patients with active EBV or CMV infections (Goossens HA. et al. 1998). If cross-reactivity was responsible for false positive OspC IgM in infectious mononucleosis, we would expect false positive IgM for EBV and CMV in early Lyme disease. And this is is exactly what has been found in two cases of acute Lyme disease, where falsely positive IgM to VCA has been documented (Pavletic A. Marques AR. 2017).

Latent infections reactivation

It has been described a rise of EBV VCA IgM titers in CMV primary infections. This is likely due to EBV reactivation in many cases. This can lead to a misdiagnosis of a primary EBV infection, instead of a primary CMV infection. This error can have serious consequences during immune suppression or pregnancy, when CMV infections are health-threatening (Aalto MS et al. 1998).

Rheumatoid factor interference

As mentioned in the introduction, rheumatoid factor (RF) is an autoantibody – mainly of the IgM subclass – that is found in most of the patients with rheumatoid arthritis (Hermann E. et al. 1986). It binds the constant region (Fc region) of human IgGs and thus can bind the enzyme-linked immunoglobulins often used in serologic assays, leading to falsely positive results (Pan J. et al. 2018).

Cross-reactivity with autoantigens

Another possible cause of falsely positive IgM tests to a pathogen is the presence of autoantibodies other than RF. Autoantibodies to fibroblast cells have been found to be the cause of a false positive IgM test for HSV and CMV (Ziegler T. et al. 1989). This kind of reactivity to self-antigens is probably non-specific of a particular autoimmune disease, and it has been found for instance in pretibial myxedema, Graves’ disease, and Hashimoto’s thyroiditis (Arnold K. et al. 1995).

The effect of prevalence on the rate of false positive results

The likelihood of a false positive result is inversely correlated with the prevalence of the pathogen in the specific population considered. In other words, the rarer the disease, the more likely a positive test for that disease is a false positive. This can be easily seen introducing the predictive positive value (PPV), which is the probability that a positive test is really a true positive (Lalkhem AG. et McCluskey A. 2008). PPV is given by


In the following figure, you can see how PPV increases as the prevalence increases. This diagram has been plotted considering a sensitivity of 67% and a specificity of 53%.

PPV 2.png



End ME/CFS Worldwide Tour (Italy)

End ME/CFS Worldwide Tour (Italy)

These are the slides that I used in my presentation during the Italian stage of the End ME/CFS Worldwide tour.

I have not thanked enough Chiara Sacchetto, Girolamo Carollo, Giada Da Ros, Valentina Viganò, Maria Pia Cavalet and Angela Colucci for their hard work in organizing this meeting. And of course, my English is probably not good enough to express my gratitude to Linda Tannenbaum and the Open Medicine Foundation. I have no words for that.

There are a few slides in Italian, the others are in English. I have included also some slides that I didn’t have the chance to show during the meeting. Download the slides.